Hey,
I just wanted to make another comment on my last post. The reports in QB are completely different from the reports that are created with the Report Designer in Method, this is the main reason that we are unable to import the templates.
The Reports that Method pulls over are Financial Reports, these reports can be filtered in Method before being displayed. Unfortunately, Financial Reports cannot be customized with the Report Designer.
What you are talking about is a Invoice Template. If you want to change layout used when an Invoice is printed, possibly to match your template, you want to use the Report Designer. This tool will help you organize the data and display it as you would like.
Check out the link in the post above, the webinars will help you get started.